PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 347aa    MW: 38557.8 Da    PI: 10.4287
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.59.8e-32277334359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Aco005240.1 277 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLDDPSMLIVTYEGEHNHT 334
                  9************************9988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.2E-19228273IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.6E-34263334IPR003657WRKY domain
PROSITE profilePS5081130.228270336IPR003657WRKY domain
SuperFamilySSF1182903.14E-27273334IPR003657WRKY domain
SMARTSM007744.7E-39275335IPR003657WRKY domain
PfamPF031061.2E-27277333IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEEVEEANRE AIESCYKVLS LISQSQDQQH LQRNILAETG EAVSKFKKVV SILSSSVGHA  60
RVRIVKKSTT PLNQKILLQD PLISNPNPFN LLQRSALHKQ QFRPKIYLEN PIVELKPASS  120
RSTLQLPPQA APPAHFGFLQ QQQQLLQQQQ QQQQQNSQRY QFQAEIFRRS NSGINLKFDS  180
SSGVQTISSA RSFLSSLSMD GSVDGKAFHL IGGGAAASDP AHSFPPPKRR CTGKGEDGSG  240
KCAATGRCHC SKRRKLRVKR SIKVPAISNK LADIPPDEYS WRKYGQKPIK GSPHPRGYYK  300
CSSMRGCPAR KHVERCLDDP SMLIVTYEGE HNHTRAVTHS THSAQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-212713331071WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923468.11e-159PREDICTED: protein WRKY1-like isoform X1
SwissprotQ9SR071e-100WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLF2CT241e-129F2CT24_HORVD; Predicted protein
STRINGMLOC_77258.21e-127(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.12e-82WRKY DNA-binding protein 74